PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013681.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family FAR1
Protein Properties Length: 547aa    MW: 61484.8 Da    PI: 8.2749
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013681.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.24.2e-21126211290
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  fY +Y++++GF v++++s++   +g+ +++tf+C keg+++ +k     + r+r+  ++gC+a++++k    ++ w+++ + l+HnH+l 
  Aco013681.1 126 FYTAYGYRTGFGVTRRTSHSM--HGKKYRQTFTCCKEGNPRVKKAV--VKCRRRPIVKCGCRAMMVIKDPAlKDSWVIDYVILKHNHPLD 211
                  9*************9998887..7788************9997765..99999***********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-18126212IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.075287323IPR007527Zinc finger, SWIM-type
SMARTSM005750.0026298325IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MVVIEPNPDA EDRRRRRTNL RAPGAPPEAA AAPPPRGVAG AGDDGGDSDS DESPESARNN  60
MRIKESSSGV EPAEDRSANS SEECSAGKEN GMAAVAHEEP TTSAADDALV PKVGMRFKSI  120
EEAFLFYTAY GYRTGFGVTR RTSHSMHGKK YRQTFTCCKE GNPRVKKAVV KCRRRPIVKC  180
GCRAMMVIKD PALKDSWVID YVILKHNHPL DPDRVRFMKC FRELPITIKR QLHVNEFQGT  240
LPTMPINAKF QDEVRHLIQC VCTRVERNGP IVTYMVTELI ESRQLDYKVT YNSAEHEVWC  300
ICCSFEYSGI LCRHALCVLR QEFVVILPSK YVLARWRKDF KILQAFNSTP QMALTGETGN  360
YDELVARGQQ YLLDIADFAA FNHDMKVYAL NALREARDKV VKQEVSLGDR TVDDDSLHNT  420
LLASNICIPP NMDVQSDGLF LASATKVFDS PRAHPKVPHK KRPVSQRERA SEELKKQRRE  480
NDSIIASKNV GLHVLENQSN AAVPMTQFTT QENFSVQVGS DPSPWLYNPS YFYWHGAGIQ  540
DPTRRT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11217RRRRRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008808221.12e-74PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.17e-21FAR1-related sequence 6